Publications

* Corresponding authors

In the pipeline

Li Li, Sarah Bowling, Qi Yu, Sean E. McGeary, Karel Alcedo, Bianca Lemke, Mark Ferreira, Allon M. Klein, Shou-Wen Wang*, Fernando D. Camargo*, A mouse model with high clonal barcode diversity for joint lineage, transcriptomic, and epigenomic profiling in single cellss (2023, bioRxiv)

Published

2022

CoSpar identifies early cell fate biases from single-cell transcriptomic and lineage information

Shou-Wen Wang*, Michael J. Herriges, Kilian Hurley, Darrell N. Kotton, Allon M. Klein*

Nature Biotechnology  ·  21 Feb 2022

Lineage tracingCell fate predictionTrajectory inference

Main textSupplement methodsDocumentationCode1 hour video20min video

2020

Single-cell lineage tracing unveils a role for TCF15 in haematopoiesis

Alejo E. Rodriguez-Fraticelli, Caleb Weinreb, Shou-Wen Wang, Rosa P. Migueles, Maja Jankovic, Marc Usart, Allon M. Klein, Sally Lowell, Fernando D. Camargo

Nature  ·  15 Jul 2020

Lineage tracingSerial clonal analysisGraphic modeling

Supplement methods

2019

Emergence of collective oscillations in adaptive cells

Shou-Wen Wang*, and Lei-Han Tang*

Nature Communications  ·  01 Dec 2019

Collective oscillationsSensory adaptationNon-equilibirum statistical physics

Main textSupplemental methods

Revealing evolutionary constraints on proteins through sequence analysis

Shou-Wen Wang, Anne-Florence Bitbol, Ned S. Wingreen

PLOS Computational Biology  ·  24 Apr 2019

Protein evolutionSingle-site mutation effectElastic network modeling

Main textSupplemental methods

2018

Inferring energy dissipation from violation of the fluctuation-dissipation theorem

Shou-Wen Wang

Physical Review E  ·  18 May 2018

Non-equilibirum statistical physicsAsymmetric transitions

Main text

2016

Entropy Production of Nanosystems with Time Scale Separation

Shou-Wen Wang, Kyogo Kawaguchi, Shin-ichi Sasa, Lei-Han Tang

Physical Review Letters  ·  10 Aug 2016

Non-equilibrium statistical physicsEntropy productionTime-scale separationCoarse-graining

Main textSupplemental methods

2015

Energy dissipation in an adaptive molecular circuit

Shou-Wen Wang, Yueheng Lan, Lei-Han Tang

Journal of Statistical Mechanics: Theory and Experiment  ·  21 Jul 2015

Non-equilibirum statistical physicsSensory adaptation

Main text

2013

Nonlinear waves on circle networks with excitable nodes

Shouwen Wang, Yueheng Lan

Journal of Physics A: Mathematical and Theoretical  ·  14 Aug 2013

Nonlinear dynamicsSynchronization

Main text