Publications

* Corresponding authors

In the pipeline

L. Li, S. Bowling, S. E. McGeary, Q. Yu, B. Lemke, K. Alcedo, Y. Jia, X. Liu, M. Ferreira, A. M. Klein, Shou-Wen Wang*, Fernando D. Camargo*, A mouse model with high clonal barcode diversity for joint lineage, transcriptomic, and epigenomic profiling in single cells, Cell (2023, in press)

Published

2022

CoSpar identifies early cell fate biases from single-cell transcriptomic and lineage information

Shou-Wen Wang*, Michael J. Herriges, Kilian Hurley, Darrell N. Kotton, Allon M. Klein*

Nature Biotechnology  ·  21 Feb 2022

Lineage tracingCell fate predictionTrajectory inference

Main textSupplement methodsDocumentationCode1 hour video20min video

2020

Single-cell lineage tracing unveils a role for TCF15 in haematopoiesis

Alejo E. Rodriguez-Fraticelli, Caleb Weinreb, Shou-Wen Wang, Rosa P. Migueles, Maja Jankovic, Marc Usart, Allon M. Klein, Sally Lowell, Fernando D. Camargo

Nature  ·  15 Jul 2020

Lineage tracingSerial clonal analysisGraphic modeling

Supplement methods

2019

Emergence of collective oscillations in adaptive cells

Shou-Wen Wang*, and Lei-Han Tang*

Nature Communications  ·  01 Dec 2019

Collective oscillationsSensory adaptationNon-equilibirum statistical physics

Main textSupplemental methods

Revealing evolutionary constraints on proteins through sequence analysis

Shou-Wen Wang, Anne-Florence Bitbol, Ned S. Wingreen

PLOS Computational Biology  ·  24 Apr 2019

Protein evolutionSingle-site mutation effectElastic network modeling

Main textSupplemental methods

2018

Inferring energy dissipation from violation of the fluctuation-dissipation theorem

Shou-Wen Wang

Physical Review E  ·  18 May 2018

Non-equilibirum statistical physicsAsymmetric transitions

Main text

2016

Entropy Production of Nanosystems with Time Scale Separation

Shou-Wen Wang, Kyogo Kawaguchi, Shin-ichi Sasa, Lei-Han Tang

Physical Review Letters  ·  10 Aug 2016

Non-equilibrium statistical physicsEntropy productionTime-scale separationCoarse-graining

Main textSupplemental methods

2015

Energy dissipation in an adaptive molecular circuit

Shou-Wen Wang, Yueheng Lan, Lei-Han Tang

Journal of Statistical Mechanics: Theory and Experiment  ·  21 Jul 2015

Non-equilibirum statistical physicsSensory adaptation

Main text

2013

Nonlinear waves on circle networks with excitable nodes

Shouwen Wang, Yueheng Lan

Journal of Physics A: Mathematical and Theoretical  ·  14 Aug 2013

Nonlinear dynamicsSynchronization

Main text